Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009587.1 Corchorus capsularis cultivar CVL-1 contig09608, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  9594

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
324--397
29
2.5
29
93
2
121
45
4
35
14
1.64
803--835
16
2.1
17
88
11
52
63
18
0
18
1.31
1797--1841
21
2.1
22
87
4
65
40
8
28
22
1.84
5504--5531
14
2.0
14
100
0
56
50
0
7
42
1.30
5942--5988
20
2.2
20
85
7
58
59
4
6
29
1.41
5950--5995
20
2.2
20
96
3
83
56
4
8
30
1.49
6138--6210
31
2.4
31
97
0
137
31
17
6
43
1.75
6140--6234
31
3.1
30
89
6
102
34
14
5
45
1.68
6255--6293
20
2.0
19
95
5
69
23
10
0
66
1.22
6345--6496
22
6.8
22
72
13
105
36
11
14
37
1.82
6377--6474
44
2.2
43
85
5
142
34
12
17
35
1.87
6479--6525
22
2.1
22
88
0
67
25
4
23
46
1.70
6608--6660
22
2.4
21
78
9
61
35
9
18
35
1.84
6732--6949
22
9.8
22
73
15
130
44
10
12
33
1.76
7054--7279
22
10.6
20
71
16
100
39
8
15
36
1.78
7031--7255
43
5.2
44
71
15
132
39
7
14
38
1.74
7222--7290
22
3.1
22
78
12
70
33
11
15
39
1.84
7295--7381
42
2.1
42
82
8
106
34
12
13
39
1.83

Tables:   1

The End!