Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009588.1 Corchorus capsularis cultivar CVL-1 contig09609, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  9377

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
539--617
21
3.8
21
83
5
97
40
12
8
37
1.75
602--664
22
2.8
23
75
15
60
49
9
9
31
1.68
3182--3221
16
2.5
16
91
0
62
12
0
40
47
1.41
3288--3359
22
3.5
20
81
12
83
44
9
5
40
1.61
3397--3740
22
15.7
22
72
9
195
36
17
9
36
1.82
3556--3633
41
1.9
41
92
5
131
34
14
10
41
1.79
3532--3657
63
2.0
62
83
7
157
34
17
8
39
1.81
3772--3857
21
4.0
22
72
10
61
37
17
5
39
1.74
3924--4063
22
6.5
22
69
11
67
36
15
11
36
1.84
3953--3994
21
2.0
22
90
4
68
33
26
7
33
1.83
4468--4527
21
2.7
23
70
17
56
35
21
8
35
1.84
4468--4562
44
2.2
44
85
9
124
34
20
9
35
1.85
4356--4569
22
9.8
22
72
14
104
36
16
10
36
1.83
4622--4720
22
4.6
22
82
7
114
42
17
7
33
1.76
5749--5778
2
15.0
2
92
0
51
53
0
0
46
1.00
6678--6903
75
3.1
75
87
5
302
36
12
1
50
1.49
8515--8553
13
3.1
12
82
10
51
74
0
0
25
0.82
8523--8557
17
2.1
16
89
5
52
68
0
0
31
0.90

Tables:   1

The End!