Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009591.1 Corchorus capsularis cultivar CVL-1 contig09612, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48576

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
684--728
18
2.5
18
81
0
54
53
8
28
8
1.62
9573--9630
30
1.9
30
96
0
107
29
22
18
29
1.98
9784--9856
30
2.4
30
93
0
128
19
10
24
45
1.82
14169--14198
1
30.0
1
100
0
60
0
0
0
100
0.00
19435--19496
30
2.1
30
87
3
90
48
3
8
40
1.49
26351--26397
2
23.5
2
91
0
76
48
0
4
46
1.21
29220--29281
31
2.0
31
100
0
124
41
12
6
38
1.69
35153--35184
3
10.7
3
93
0
55
62
0
37
0
0.95
38386--38429
21
2.1
21
86
0
61
22
27
11
38
1.88
38614--38750
32
4.2
32
83
3
168
10
42
35
10
1.75
46355--46409
17
3.2
18
79
7
60
78
0
21
0
0.76
46354--46410
6
9.5
6
86
7
80
78
0
21
0
0.74

Tables:   1

The End!