Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009593.1 Corchorus capsularis cultivar CVL-1 contig09614, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31010

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
808--844
18
2.1
18
94
0
65
18
24
21
35
1.96
2418--2448
15
2.1
14
94
5
53
0
25
0
74
0.82
4142--4190
21
2.5
19
81
12
55
26
6
20
46
1.73
7172--7200
15
2.0
15
93
6
51
0
20
0
79
0.74
7683--7714
11
2.9
11
100
0
64
9
28
34
28
1.88
9328--9355
13
2.2
13
100
0
56
28
17
0
53
1.44
10546--11119
178
3.0
195
87
9
903
29
19
28
21
1.98
10925--11321
217
1.8
217
96
0
740
27
20
28
23
1.99
11174--11495
174
1.9
174
95
0
581
28
20
28
22
1.98
16009--16034
2
13.0
2
100
0
52
50
0
0
50
1.00
17430--17459
14
2.1
14
100
0
60
26
13
13
46
1.80
22424--22602
48
3.7
48
90
0
268
38
25
7
28
1.83
23894--23945
16
3.3
16
74
15
63
67
5
9
17
1.38
29384--29419
17
2.1
17
89
0
54
63
2
2
30
1.22
29764--29788
11
2.3
11
100
0
50
28
0
16
56
1.41
30902--30931
2
15.0
2
100
0
60
50
0
0
50
1.00

Tables:   1

The End!