Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009598.1 Corchorus capsularis cultivar CVL-1 contig09619, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54037

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
23133--23215
27
3.0
27
91
5
121
28
25
25
20
1.99
27164--27191
2
14.0
2
100
0
56
0
50
0
50
1.00
29566--29606
5
7.8
5
89
5
55
14
0
0
85
0.60
29566--29607
11
3.9
11
90
3
68
14
0
0
85
0.59
29565--29607
22
2.0
22
95
0
77
13
0
0
86
0.58
31369--31519
33
4.8
30
89
6
203
30
26
27
15
1.96
31387--31519
33
4.1
33
92
5
227
30
27
29
12
1.92
31369--31519
63
2.4
62
89
6
216
30
26
27
15
1.96
31545--31610
30
2.2
30
88
0
96
42
33
19
4
1.72
33137--33161
3
8.3
3
100
0
50
0
32
0
68
0.90
34513--34797
109
2.7
106
88
9
388
36
10
1
50
1.48
36394--36424
14
2.2
14
94
0
53
6
19
3
70
1.22
36791--36869
40
2.0
40
92
5
133
48
24
15
12
1.79
45250--45278
3
9.7
3
100
0
58
68
0
0
31
0.89
46315--46372
19
2.9
20
82
7
73
39
10
18
31
1.85
46958--47036
39
2.0
39
92
0
131
34
17
22
25
1.96
49827--49988
78
2.1
77
80
8
184
48
2
11
37
1.53
49877--49998
39
3.1
39
63
25
94
48
0
13
37
1.48
49867--50091
70
3.1
70
84
9
297
48
0
13
37
1.46
49861--50099
78
3.2
77
89
7
341
49
0
12
36
1.47
50183--50223
6
7.3
6
86
13
61
48
0
17
34
1.47
50183--50226
16
2.7
16
96
3
79
47
0
18
34
1.49
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51377--51415
4
9.5
4
88
5
60
25
2
2
69
1.14
51491--51535
22
2.0
22
86
0
63
22
17
11
48
1.78
51733--51794
32
1.9
33
83
9
83
9
38
40
11
1.74
51825--51879
23
2.5
22
77
11
58
54
3
3
38
1.36
51966--52017
11
4.7
11
80
0
50
19
26
32
21
1.97
51966--52044
33
2.4
33
80
0
86
15
32
34
17
1.91
52617--52685
30
2.3
30
85
9
88
46
17
1
34
1.57
52628--52687
30
1.9
32
90
6
97
50
15
1
33
1.54
53517--53812
109
2.7
109
91
4
450
49
1
11
37
1.49

Tables:   1

The End!