Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009599.1 Corchorus capsularis cultivar CVL-1 contig09620, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39358

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4594--4644
21
2.4
21
93
0
84
3
19
41
35
1.70
10198--10320
58
2.1
58
95
0
219
33
17
13
36
1.88
10625--10747
59
2.1
59
85
8
162
35
12
15
36
1.85
10842--10949
57
1.9
57
86
3
155
39
19
11
29
1.86
13398--13679
150
1.9
150
87
0
420
29
24
20
24
1.99
17704--18000
148
2.0
148
100
0
594
39
14
12
32
1.84
19114--19153
21
1.9
21
85
10
55
30
7
5
57
1.48
19807--19885
2
44.5
2
72
22
70
54
0
0
45
0.99
19805--19890
24
3.7
22
78
18
95
53
0
0
46
1.00
19816--19880
31
2.1
32
94
2
114
53
0
0
46
1.00
20206--20274
37
1.9
35
88
5
102
40
36
7
15
1.76
30520--30676
80
2.0
78
82
7
192
38
24
8
28
1.84
31879--31945
21
3.0
21
71
12
71
37
4
10
47
1.58
35967--35996
14
2.2
14
94
5
53
36
13
6
43
1.70
36913--37015
30
3.4
29
79
4
107
18
29
14
37
1.90
37710--37747
1
38.0
1
100
0
76
0
0
0
100
0.00
38324--38348
7
3.6
7
100
0
50
16
28
44
12
1.83

Tables:   1

The End!