Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01009600.1 Corchorus capsularis cultivar CVL-1 contig09621, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 13156
ACGTcount: A:0.31, C:0.21, G:0.15, T:0.33


Found at i:1136 original size:19 final size:19

Alignment explanation


    Indices: 1112--1148  Score: 56
    Period size: 19  Copynumber: 1.9  Consensus size: 19

       1102 CTTGGAATGA

                               
       1112 AATTTTGTTTTGAATTTTG
          1 AATTTTGTTTTGAATTTTG

                  *     *     
       1131 AATTTTTTTTTGGATTTT
          1 AATTTTGTTTTGAATTTT

       1149 TGAAAACCTT


Statistics
Matches: 16,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  19   16  1.00

ACGTcount: A:0.19, C:0.00, G:0.14, T:0.68


Consensus pattern (19 bp):   
AATTTTGTTTTGAATTTTG

Found at i:1137 original size:20 final size:19

Alignment explanation


    Indices: 1109--1175  Score: 55
    Period size: 20  Copynumber: 3.3  Consensus size: 19

       1099 AATCTTGGAA

                                
       1109 TGAAATTTTGTTTTGAATTT
          1 TGAAATTTT-TTTTGAATTT

                *           *   
       1129 TGAATTTTTTTTTGGATTTT
          1 TGAAATTTTTTTT-GAATTT

                                   
       1149 TGAAAACCTTTTATTTT-AATTT
          1 TG-AAA--TTTT-TTTTGAATTT

                 
       1171 TGAAA
          1 TGAAA

       1176 GACTCCTTTT


Statistics
Matches: 38,  Mismatches: 4, Indels: 9
        0.75            0.08        0.18

Matches are distributed among these distances:
  19    4  0.11
  20   15  0.39
  21    5  0.13
  22    6  0.16
  23    4  0.11
  24    4  0.11

ACGTcount: A:0.27, C:0.03, G:0.12, T:0.58


Consensus pattern (19 bp):   
TGAAATTTTTTTTGAATTT
Done.