Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009601.1 Corchorus capsularis cultivar CVL-1 contig09622, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64966

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1161--1195
15
2.3
15
100
0
70
0
14
17
68
1.21
7958--8108
72
2.1
72
88
2
223
23
9
25
41
1.85
9707--9759
27
2.0
27
85
7
74
39
9
1
49
1.46
10757--10914
62
2.5
63
90
5
255
46
11
12
30
1.76
11185--11281
31
3.1
31
80
2
106
32
20
28
17
1.96
11249--11299
24
2.1
24
85
7
68
29
23
27
19
1.98
18651--18683
10
3.3
10
91
8
50
21
0
0
78
0.75
19267--19375
56
1.9
56
100
0
218
42
13
14
29
1.84
27848--27874
14
1.9
14
100
0
54
22
0
0
77
0.76
28815--28846
15
2.1
15
100
0
64
34
21
12
31
1.91
30599--30640
21
2.0
21
86
9
59
30
16
2
50
1.58
31965--32239
109
2.5
109
93
4
455
38
11
1
48
1.50
34283--34335
27
2.0
27
89
7
83
41
7
1
49
1.42
35420--35927
253
2.0
253
100
0
1016
36
9
10
43
1.73
37015--37086
28
2.4
32
80
15
100
75
6
6
11
1.20
42102--42200
34
3.0
34
88
4
141
27
18
28
26
1.98
45549--45608
22
2.7
22
85
10
95
16
5
26
51
1.65
59800--60156
75
4.8
75
94
0
624
13
27
33
24
1.93
62875--62927
13
4.2
13
92
7
92
81
0
13
5
0.86
62875--62927
25
2.1
25
93
6
90
81
0
13
5
0.86
63704--63729
12
2.2
12
100
0
52
7
0
23
69
1.14
64792--64837
16
2.7
17
75
18
51
23
6
6
63
1.43

Tables:   1

The End!