Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009602.1 Corchorus capsularis cultivar CVL-1 contig09623, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65336

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6582--6715
31
4.2
32
80
2
146
35
25
22
17
1.95
6585--6724
63
2.2
63
83
0
172
33
25
22
18
1.97
12886--12911
12
2.2
12
100
0
52
26
15
23
34
1.94
13178--13279
31
3.4
31
78
13
88
38
19
17
24
1.93
15177--15277
51
2.0
51
96
0
184
33
6
20
38
1.80
20749--20785
2
18.5
2
100
0
74
51
0
0
48
1.00
20880--21011
34
3.8
34
80
9
131
42
29
3
24
1.72
21513--21618
31
3.5
31
77
10
103
21
16
22
38
1.93
23099--23583
244
2.0
244
100
0
970
37
11
22
28
1.89
30379--30412
17
2.0
17
88
0
50
38
2
20
38
1.68
35478--35543
32
2.1
32
100
0
132
39
12
27
21
1.88
36686--36727
12
3.4
12
93
6
75
33
16
23
26
1.96
37466--37498
3
11.3
3
87
6
50
33
33
0
33
1.58
38090--38115
10
2.6
10
100
0
52
30
7
23
38
1.83
46341--46419
29
2.7
29
84
3
97
18
29
15
36
1.92
50897--50942
18
2.6
18
80
13
67
54
21
8
15
1.68
53133--53178
18
2.6
18
83
13
67
15
6
21
56
1.61
61323--61394
29
2.4
29
81
2
81
40
26
11
22
1.87

Tables:   1

The End!