Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009603.1 Corchorus capsularis cultivar CVL-1 contig09624, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  38552

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1177--1736
35
16.0
35
85
6
418
34
19
17
28
1.94
1177--1538
105
3.4
105
86
3
471
35
18
18
28
1.94
8637--8780
75
1.9
75
91
2
236
33
15
6
44
1.72
22083--22166
42
2.0
42
85
0
114
35
11
20
32
1.89
22233--22336
33
3.2
31
79
12
93
15
42
33
8
1.77
22266--22336
31
2.2
33
85
9
94
12
42
35
9
1.76
22341--22419
33
2.4
34
89
4
117
10
26
41
21
1.85
22469--22512
21
2.1
21
86
0
61
36
9
29
25
1.86
22978--23028
27
1.9
26
84
4
66
43
9
3
43
1.56
25172--25206
18
1.9
18
94
0
61
20
17
20
42
1.89
27329--27680
70
5.0
70
95
0
598
24
19
19
37
1.94
32261--32338
29
2.6
28
80
9
93
41
14
24
20
1.89
33250--33300
27
1.9
26
84
4
66
43
7
3
45
1.51
38419--38483
30
2.2
30
88
2
96
20
29
15
35
1.93
38404--38483
29
2.7
29
84
5
99
18
30
16
35
1.93

Tables:   1

The End!