Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009604.1 Corchorus capsularis cultivar CVL-1 contig09625, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  109465

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25--98
29
2.5
30
86
4
114
33
17
32
16
1.92
25--125
29
3.4
29
83
4
112
35
17
30
15
1.92
11989--12019
16
1.9
16
93
0
53
35
6
0
58
1.24
12362--14010
204
8.3
199
80
7
1787
35
17
13
33
1.89
17865--17938
37
2.0
37
81
5
87
41
8
16
33
1.77
20407--20439
2
16.5
2
100
0
66
51
0
0
48
1.00
20475--20533
31
1.9
31
82
6
75
28
16
3
50
1.61
20844--20881
19
2.0
20
85
15
53
28
5
2
63
1.30
21045--21110
22
3.0
22
95
0
114
30
12
18
39
1.87
21200--21258
22
2.7
22
79
10
66
37
10
16
35
1.83
21335--21605
22
12.4
22
72
13
143
43
8
13
34
1.75
21687--21734
19
2.5
19
93
3
78
45
10
18
25
1.81
21687--22239
22
25.6
22
71
9
228
40
10
15
33
1.82
22377--22408
3
11.0
3
93
6
57
65
0
0
34
0.93
22380--22408
14
2.1
14
100
0
58
65
0
0
34
0.93
22375--22408
17
2.0
17
100
0
68
64
0
0
35
0.94
27029--27071
23
1.9
23
85
4
61
55
6
18
18
1.64
33183--33211
2
14.5
2
100
0
58
51
0
0
48
1.00
35784--35813
1
30.0
1
100
0
60
100
0
0
0
0.00
39289--39362
2
37.0
2
100
0
148
0
50
0
50
1.00
54513--54659
74
2.0
72
89
5
224
42
19
12
26
1.86
56458--56617
31
5.5
31
78
13
149
17
21
26
33
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56506--56608
53
1.9
53
88
0
152
17
20
26
35
1.94
58603--58635
2
17.0
2
93
6
59
48
0
0
51
1.00
62673--62713
17
2.4
16
88
8
55
75
0
24
0
0.80
64075--64102
7
4.0
7
100
0
56
42
28
28
0
1.56
74613--74690
32
2.4
32
85
10
97
35
7
28
28
1.85
78409--78534
59
2.2
57
87
4
173
56
2
22
19
1.53
79845--79882
11
3.5
11
85
10
51
57
2
0
39
1.12
85840--85886
15
3.1
15
73
14
51
29
29
21
19
1.97
88396--88427
11
2.9
11
90
0
55
28
43
25
3
1.69
88744--88781
18
2.1
18
100
0
76
73
10
0
15
1.09
94135--94160
3
8.7
3
100
0
52
69
0
0
30
0.89
94566--94728
80
2.0
81
97
1
310
38
6
12
42
1.68
95693--95736
2
21.0
2
81
9
52
43
9
0
47
1.35
95765--95830
31
2.1
32
83
5
82
31
18
3
46
1.64
97094--97383
44
6.7
44
72
14
187
40
8
15
35
1.78
97131--97383
127
2.0
127
82
3
312
40
8
15
35
1.78
97094--97652
22
25.6
22
69
13
165
40
9
14
35
1.78
97749--97783
3
11.7
3
100
0
70
68
0
0
31
0.90
98135--98175
20
2.0
21
90
4
66
36
19
19
24
1.95
101941--102149
23
9.0
23
77
8
165
18
7
22
51
1.71
101983--102045
27
2.3
27
83
8
74
14
6
25
53
1.64
101966--102068
49
2.1
51
81
7
122
16
6
26
50
1.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
103011--103109
30
3.2
30
64
20
78
55
12
10
22
1.66
103266--103379
37
3.1
37
73
7
131
53
7
21
17
1.69
105758--105802
18
2.4
18
96
3
81
55
17
4
22
1.60

Tables:   1

The End!