genome.fa.s9605.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009605.1 Corchorus capsularis cultivar CVL-1 contig09626, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77778

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5744--5774	7	4.6	7	92	8	55	45	0	38	16	1.47
5742--5770	13	2.2	13	100	0	58	44	0	41	13	1.44
14714--14806	45	2.1	45	91	0	150	20	22	17	39	1.92
15522--16364	282	3.0	282	96	0	1544	33	21	10	34	1.87
18649--18895	78	3.2	78	92	1	388	50	0	12	36	1.44
24551--24655	52	2.0	52	100	0	210	22	24	12	40	1.89
24793--24852	22	2.7	22	76	5	59	36	11	15	36	1.83
24817--24901	45	1.9	44	85	2	116	37	12	10	38	1.79
24921--25038	22	5.5	22	79	2	132	32	16	8	43	1.78
24921--25038	44	2.7	44	84	5	152	32	16	8	43	1.78
24817--25038	22	10.5	22	70	14	91	34	14	9	40	1.80
25095--25240	44	3.3	44	75	7	143	32	13	10	43	1.78
25122--25199	22	3.6	22	85	1	104	35	15	7	41	1.76
25093--25240	22	6.7	22	76	3	100	33	14	10	42	1.79
25317--25393	38	2.1	37	87	2	109	57	12	16	12	1.66
25517--25575	30	1.9	31	93	3	102	45	3	18	32	1.66
25683--25726	22	2.0	22	86	8	63	40	11	4	43	1.61
25741--25954	22	9.7	22	70	9	123	39	17	10	32	1.84
25931--26004	25	3.0	25	84	3	98	40	16	5	37	1.71
28497--28528	2	16.0	2	100	0	64	50	0	0	50	1.00
32833--32865	14	2.4	14	100	0	66	33	9	27	30	1.88
34183--34342	52	3.1	52	100	0	320	46	17	11	24	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34661--34704	18	2.4	18	78	14	54	59	13	0	27	1.35
34984--35025	20	2.1	20	100	0	84	9	23	21	45	1.81
35599--35641	22	2.0	22	90	0	68	13	16	30	39	1.87
40486--40529	23	1.9	23	100	0	88	29	20	36	13	1.91
52881--52980	30	3.4	29	83	6	121	17	30	16	37	1.91
53178--53249	29	2.5	31	82	13	98	37	13	30	18	1.89

Tables:   1

The End!