Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01009607.1 Corchorus capsularis cultivar CVL-1 contig09628, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4194
ACGTcount: A:0.32, C:0.18, G:0.15, T:0.35


Found at i:1441 original size:75 final size:76

Alignment explanation


    Indices: 1352--1505  Score: 231
    Period size: 75  Copynumber: 2.0  Consensus size: 76

       1342 TCGCTACTAT

                                    *                     *                  
       1352 TCAATCTTTATTATT-TATTTATTTCGTAAAATATCTCCTAAATCTTCCACAATTTGGCAAGATT
          1 TCAATCTTTATTATTAT-TTTATTCCGTAAAATATCTCCTAAATCTCCCACAATTTGGCAAGATT

                        
       1416 TAAAAAATATTC
         65 TAAAAAATATTC

                                     *        *                      *       
       1428 TCAA-CTTTATTATTATTTTATTCCTTAAAATATGTCCTAAATCTCCCACAATTTGGGAAGATTT
          1 TCAATCTTTATTATTATTTTATTCCGTAAAATATCTCCTAAATCTCCCACAATTTGGCAAGATTT

             *         
       1492 AGAAAATATTC
         66 AAAAAATATTC

               
       1503 TCA
          1 TCA

       1506 TTATTATTTT


Statistics
Matches: 71,  Mismatches: 6, Indels: 3
        0.89            0.08        0.04

Matches are distributed among these distances:
  75   66  0.93
  76    5  0.07

ACGTcount: A:0.35, C:0.16, G:0.06, T:0.42


Consensus pattern (76 bp):   
TCAATCTTTATTATTATTTTATTCCGTAAAATATCTCCTAAATCTCCCACAATTTGGCAAGATTT
AAAAAATATTC

Done.