genome.fa.s9608.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009608.1 Corchorus capsularis cultivar CVL-1 contig09629, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71981

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4295--4478	60	3.0	60	95	1	314	42	15	13	28	1.84
7442--7469	13	2.2	13	100	0	56	25	25	7	42	1.80
8711--8843	69	1.9	69	92	0	221	39	9	9	41	1.71
11885--11965	36	2.2	36	97	0	153	30	24	19	24	1.98
11901--11965	21	3.4	21	68	24	61	30	24	20	24	1.98
13255--13693	157	2.8	157	98	0	851	29	11	16	42	1.84
17110--17138	2	14.5	2	100	0	58	51	0	0	48	1.00
18909--18957	16	3.2	16	80	13	50	53	4	26	16	1.61
18929--18958	14	2.1	14	93	0	51	53	0	23	23	1.46
19174--19211	11	3.5	11	89	10	51	39	0	2	57	1.12
19415--19443	15	1.9	15	100	0	58	41	6	3	48	1.47
27182--27295	57	2.0	57	96	0	210	36	12	13	37	1.82
28935--29004	6	11.2	6	82	8	86	18	15	31	34	1.92
31775--31799	2	12.5	2	100	0	50	52	0	0	48	1.00
32396--32595	101	2.0	100	96	1	366	40	12	9	38	1.75
36597--36906	159	1.9	161	92	4	518	41	13	9	34	1.77
39747--39782	18	2.1	17	94	5	63	11	16	8	63	1.49
40512--40559	20	2.3	21	85	3	71	18	6	8	66	1.39
40863--40922	27	2.3	27	85	2	77	61	6	1	30	1.31
41498--41558	16	4.0	15	76	23	56	22	0	0	77	0.78
41509--41558	22	2.3	22	82	6	66	24	0	0	76	0.80
41498--41573	34	2.2	33	81	6	89	25	1	0	73	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55568--55620	27	2.0	27	85	7	74	39	9	1	49	1.46
65220--65291	36	2.0	36	100	0	144	19	11	16	52	1.73
65524--65611	29	2.9	30	69	3	88	30	10	20	38	1.86
65524--65645	60	2.0	61	98	1	237	33	8	23	34	1.85
65538--65663	31	4.1	31	73	7	114	37	6	27	28	1.81
65629--65724	43	2.2	42	92	3	156	38	2	30	29	1.69
65863--65900	18	2.2	17	90	4	58	52	7	34	5	1.53
68145--68197	12	4.2	12	72	13	52	24	7	3	64	1.37

Tables:   1

The End!