Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000961.1 Corchorus capsularis cultivar CVL-1 contig00961, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 930

Length: 1551
ACGTcount: A:0.40, C:0.14, G:0.12, T:0.34


Found at i:426 original size:25 final size:26

Alignment explanation


    Indices: 370--441  Score: 83
    Period size: 25  Copynumber: 2.8  Consensus size: 26

        360 AGGTGAACTT

                     *                *
        370 AAAAATGACTAAAATGCCCCTGAGTGT
          1 AAAAATGACCAAAATG-CCCTGAGTGC

                                 *    
        397 AAAAATGACCAAAATG-CCTGGGTGC
          1 AAAAATGACCAAAATGCCCTGAGTGC

            *              *    
        422 GAAAATGACCAAAATACCCT
          1 AAAAATGACCAAAATGCCCT

        442 TGGGTGACCC


Statistics
Matches: 39,  Mismatches: 5, Indels: 3
        0.83            0.11        0.06

Matches are distributed among these distances:
  25   21  0.54
  26    3  0.08
  27   15  0.38

ACGTcount: A:0.43, C:0.21, G:0.18, T:0.18


Consensus pattern (26 bp):   
AAAAATGACCAAAATGCCCTGAGTGC
Done.