genome.fa.s9610.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009610.1 Corchorus capsularis cultivar CVL-1 contig09631, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  134398

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3508--3587	34	2.4	32	85	8	99	28	27	10	33	1.89
10119--10148	16	1.9	16	93	6	53	0	20	0	80	0.72
29485--29530	23	2.0	23	100	0	92	21	26	13	39	1.90
39190--39444	130	2.0	125	88	3	375	28	16	18	36	1.93
40993--41023	16	1.9	16	93	0	53	83	0	16	0	0.64
47332--47392	31	2.0	30	90	6	97	31	4	24	39	1.77
57667--57697	12	2.6	12	94	0	53	0	35	0	64	0.94
58387--58545	82	1.9	82	92	2	266	35	22	17	24	1.95
58597--58649	25	2.1	25	96	0	97	37	13	13	35	1.83
58690--58762	32	2.3	32	85	4	94	23	28	24	23	1.99
59593--59623	15	2.1	15	93	0	53	3	45	6	45	1.45
62814--62914	42	2.4	42	94	0	184	38	22	13	24	1.91
73627--73673	3	15.3	3	82	4	58	2	29	0	68	1.02
78143--78195	20	2.7	20	82	8	63	62	1	1	33	1.17
78728--78759	16	2.0	16	100	0	64	56	0	31	12	1.37
83556--83632	40	1.9	40	94	0	136	23	37	18	20	1.94
96843--96873	7	4.4	7	100	0	62	45	29	0	25	1.54
98968--99131	74	2.2	76	89	4	255	32	10	18	37	1.85
99038--99246	116	1.8	115	90	3	339	31	9	18	40	1.83
99146--99325	73	2.5	72	98	0	342	32	11	16	38	1.85
98968--99318	189	1.9	188	89	3	553	32	10	17	39	1.84
106958--107029	35	2.1	35	100	0	144	34	5	29	30	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108153--108187	14	2.4	15	90	9	63	0	60	0	40	0.97
111267--111309	22	2.0	22	86	9	61	32	30	6	30	1.84
121846--122182	98	3.4	97	83	5	370	40	11	10	37	1.76
127644--127681	13	3.0	13	92	3	60	26	23	13	36	1.91
129418--129487	29	2.4	29	80	13	74	21	24	10	44	1.82
134314--134340	2	13.5	2	100	0	54	48	0	0	51	1.00

Tables:   1

The End!