genome.fa.s9614.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009614.1 Corchorus capsularis cultivar CVL-1 contig09635, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86696

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4959--5029	37	1.9	37	91	0	115	35	16	9	38	1.82
14513--14574	30	2.1	30	93	0	106	46	1	6	45	1.38
14723--14793	35	2.0	35	100	0	142	33	2	16	46	1.62
14862--14898	8	4.4	8	87	12	56	54	0	21	24	1.45
15025--15054	2	15.5	2	93	6	53	50	0	0	50	1.00
15247--15276	13	2.3	13	100	0	60	10	13	33	43	1.77
17941--17967	14	1.9	14	100	0	54	22	14	14	48	1.81
44378--44424	22	2.1	22	88	0	67	40	6	8	44	1.60
44635--44679	22	2.0	22	82	0	54	42	11	8	37	1.72
44644--44745	22	4.5	23	76	6	84	37	14	9	38	1.80
44775--44947	22	7.9	22	72	7	100	32	16	10	41	1.82
44465--45714	44	28.9	44	66	14	252	35	16	10	37	1.82
45062--45205	22	6.5	22	75	6	105	33	13	11	42	1.79
45206--45255	25	2.0	26	88	4	75	32	10	12	46	1.74
45314--45368	22	2.5	21	80	8	58	40	14	3	41	1.63
45354--45411	22	2.7	21	74	15	55	37	22	6	32	1.81
45488--45715	22	10.3	22	83	4	117	38	19	9	32	1.84
45488--45717	66	3.5	66	82	4	223	38	19	9	32	1.84
45880--45917	19	2.0	20	85	15	53	63	2	5	28	1.30
45931--46258	166	2.0	165	85	7	441	43	8	10	37	1.70
48194--48226	2	16.5	2	87	12	50	48	0	3	48	1.17
48553--50004	438	3.3	434	83	5	1627	42	13	13	30	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48735--50116	438	3.2	437	85	4	1648	42	13	13	30	1.83
55925--55967	16	2.4	16	85	14	50	55	0	4	39	1.20
56412--56452	18	2.2	18	86	4	55	7	9	51	31	1.62
59050--59091	20	2.1	21	86	8	61	57	7	7	28	1.52
80349--80418	31	2.3	28	85	11	86	50	0	12	37	1.41
80366--80418	28	1.9	28	88	11	83	47	0	13	39	1.43
84466--84528	23	2.7	23	95	0	108	17	26	38	17	1.92
84514--84578	33	2.0	33	87	0	94	7	27	43	21	1.80
86141--86265	61	2.0	62	83	6	155	28	14	14	42	1.85

Tables:   1

The End!