Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009616.1 Corchorus capsularis cultivar CVL-1 contig09637, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64626

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5--72
26
2.6
26
88
4
93
35
1
8
54
1.41
211--253
21
2.1
21
86
4
61
34
9
37
18
1.83
3323--3388
28
2.4
28
87
5
91
37
0
16
45
1.48
3535--3561
4
6.8
4
100
0
54
0
22
0
77
0.76
19147--19217
29
2.4
29
83
0
88
39
26
11
22
1.88
24772--24808
1
37.0
1
100
0
74
0
0
0
100
0.00
29290--29412
62
2.0
62
88
0
183
30
8
28
33
1.86
30622--30831
87
2.4
86
79
6
226
36
25
8
30
1.85
33224--33267
21
2.0
23
86
13
65
38
20
13
27
1.90
36621--36651
16
1.9
16
93
0
53
64
6
19
9
1.45
44206--44757
22
25.4
21
67
13
160
36
14
9
39
1.78
44469--44572
45
2.3
45
79
11
115
41
11
5
41
1.65
44758--44817
19
3.1
19
87
2
84
23
21
11
43
1.85
44929--45169
22
11.0
22
72
11
156
33
13
9
43
1.77
44929--45136
44
4.7
44
74
13
176
34
12
9
42
1.76
44929--45135
66
3.1
67
78
10
194
34
12
9
42
1.76
44898--45064
88
1.9
88
82
4
212
34
12
10
42
1.77
45057--45095
21
2.0
19
85
14
53
41
7
5
46
1.55
45175--45311
22
6.3
21
69
16
75
35
17
10
36
1.84
45371--45466
44
2.1
45
79
12
108
36
16
11
35
1.85
45403--45481
22
3.6
22
92
0
131
32
15
15
36
1.88
45600--45664
30
2.1
31
91
2
105
49
4
18
27
1.67
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45999--46072
37
2.0
37
100
0
148
40
10
8
40
1.70
46096--46168
29
2.4
29
86
4
101
23
23
12
41
1.88
46920--46953
3
11.3
3
100
0
68
67
0
0
32
0.91
48147--48186
19
2.1
19
95
0
71
37
7
22
32
1.82

Tables:   1

The End!