Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009617.1 Corchorus capsularis cultivar CVL-1 contig09638, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29271

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
58--156
32
3.1
32
81
5
119
41
15
13
30
1.85
3282--3399
61
1.9
63
81
6
143
36
12
14
36
1.84
3305--3413
22
5.2
22
75
10
111
33
11
15
40
1.82
4234--4284
2
26.0
2
78
11
52
49
1
5
43
1.38
5782--5839
28
2.1
28
100
0
116
29
24
12
34
1.91
5847--5914
3
22.7
3
92
5
111
30
1
33
33
1.67
7685--7727
21
2.0
21
95
0
77
34
9
11
44
1.73
13307--13435
66
2.0
66
88
0
195
16
20
38
24
1.92
14565--14655
45
2.0
46
91
2
148
32
17
24
25
1.97
16169--16878
49
14.6
48
85
3
798
30
13
31
23
1.94
20144--20186
9
4.6
9
80
8
50
46
23
9
20
1.79
22842--22867
2
13.0
2
100
0
52
50
0
0
50
1.00
22893--22951
30
2.0
30
93
0
100
37
3
16
42
1.66
22885--23153
134
2.0
134
93
2
461
41
5
12
39
1.67
23027--23085
30
2.0
30
83
6
75
37
3
18
40
1.68
23101--23212
58
1.9
59
81
7
138
43
6
6
43
1.54
26133--26186
21
2.6
21
80
16
60
48
7
12
31
1.69
26283--26327
20
2.2
20
84
0
54
51
11
11
26
1.71

Tables:   1

The End!