Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01009622.1 Corchorus capsularis cultivar CVL-1 contig09643, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5682
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.33


Found at i:5362 original size:5 final size:5

Alignment explanation


    Indices: 5330--5364  Score: 52
    Period size: 5  Copynumber: 7.0  Consensus size: 5

       5320 AAAAAACTTC

                *                     *              
       5330 CCTTC CCTTT CCTTT CCTTT CCCTT CCTTT CCTTT
          1 CCTTT CCTTT CCTTT CCTTT CCTTT CCTTT CCTTT

       5365 AAAAACTTGA


Statistics
Matches: 27,  Mismatches: 3, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
   5   27  1.00

ACGTcount: A:0.00, C:0.46, G:0.00, T:0.54


Consensus pattern (5 bp):   
CCTTT

Found at i:5364 original size:15 final size:16

Alignment explanation


    Indices: 5327--5364  Score: 60
    Period size: 15  Copynumber: 2.4  Consensus size: 16

       5317 TCCAAAAAAC

                *           
       5327 TTCCCTTCCCTTTCCT
          1 TTCCTTTCCCTTTCCT

                            
       5343 TTCCTTTCCC-TTCCT
          1 TTCCTTTCCCTTTCCT

                   
       5358 TTCCTTT
          1 TTCCTTT

       5365 AAAAACTTGA


Statistics
Matches: 21,  Mismatches: 1, Indels: 1
        0.91            0.04        0.04

Matches are distributed among these distances:
  15   12  0.57
  16    9  0.43

ACGTcount: A:0.00, C:0.45, G:0.00, T:0.55


Consensus pattern (16 bp):   
TTCCTTTCCCTTTCCT
Done.