Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009623.1 Corchorus capsularis cultivar CVL-1 contig09644, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  129115

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7489--7551
21
2.9
20
75
13
54
42
9
12
34
1.76
23094--23534
22
19.8
22
69
14
165
36
14
10
39
1.80
23175--23534
22
16.1
23
71
12
189
36
15
10
38
1.81
23302--23472
45
3.8
44
79
9
166
35
16
8
39
1.80
23096--23553
44
10.3
42
69
14
183
35
14
10
39
1.80
23675--23755
22
3.8
21
70
16
60
37
8
9
44
1.69
23768--23867
44
2.3
44
80
3
121
42
17
5
36
1.71
23783--23884
22
4.5
22
76
7
80
38
15
7
38
1.77
24397--24435
14
3.0
13
82
10
53
51
0
0
48
1.00
27883--27931
16
3.0
16
80
11
55
24
4
4
67
1.26
27889--27940
16
3.2
16
83
2
68
23
3
3
69
1.22
28663--28749
44
2.0
44
93
0
147
21
9
20
48
1.77
37315--37375
30
2.0
30
100
0
122
24
36
13
26
1.92
49726--49772
23
2.0
23
95
0
85
17
8
12
61
1.55
58398--58444
20
2.3
21
81
7
60
31
10
6
51
1.62
59178--59223
22
2.1
22
83
0
56
39
8
17
34
1.80
59569--59599
12
2.6
12
100
0
62
19
9
16
54
1.68
74573--74616
2
22.0
2
86
9
63
47
2
2
47
1.27
105413--107532
348
6.0
348
85
3
2865
20
21
21
35
1.96
105413--107532
717
3.0
700
90
4
3137
20
21
21
35
1.96
109378--109406
14
2.1
14
100
0
58
48
6
17
27
1.72
118942--118969
6
4.7
6
100
0
56
0
17
0
82
0.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
120334--120359
2
13.0
2
100
0
52
50
0
0
50
1.00
122970--123046
23
3.2
23
67
25
68
31
5
16
46
1.69
122963--123075
50
2.3
50
96
0
208
30
7
20
41
1.79
123757--123788
2
16.0
2
100
0
64
50
0
0
50
1.00
125296--125422
67
1.9
66
82
7
159
37
15
12
33
1.86
125208--125721
22
23.6
22
69
13
219
36
14
9
38
1.80
125476--125577
23
4.5
22
81
8
100
39
13
6
40
1.72
125476--125578
45
2.3
44
83
5
125
38
14
6
39
1.73
125803--125969
88
1.9
88
82
4
212
33
14
10
41
1.79
126135--126182
21
2.2
22
78
14
55
35
20
8
35
1.83
125828--126443
22
27.8
21
68
17
170
36
16
9
37
1.81
126295--126412
46
2.6
45
90
5
186
35
16
11
35
1.86
127476--127675
100
2.0
100
98
0
382
35
9
16
39
1.80
127690--127755
30
2.1
31
86
5
89
51
4
13
30
1.61
127698--127762
30
2.1
31
88
2
96
50
4
16
27
1.65
128765--128791
2
13.5
2
100
0
54
48
0
0
51
1.00

Tables:   1

The End!