Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009626.1 Corchorus capsularis cultivar CVL-1 contig09647, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34973

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5247--5301
18
3.1
18
75
0
56
3
25
5
65
1.31
6623--6657
11
3.2
11
95
0
61
57
0
5
37
1.23
7555--7605
2
26.0
2
88
4
77
47
0
3
49
1.20
18580--18641
17
4.1
17
73
26
75
22
19
16
41
1.89
18583--18638
27
2.1
27
100
0
112
17
21
16
44
1.86
18669--18754
31
2.8
31
89
0
127
17
18
25
38
1.92
22300--22328
13
2.2
13
100
0
58
31
6
34
27
1.83
25519--25543
12
2.1
12
100
0
50
44
24
8
24
1.80
26023--26078
28
2.0
28
96
0
103
26
30
14
28
1.95
26172--26206
18
1.9
18
88
0
52
60
8
28
2
1.41
26571--26609
18
2.2
18
100
0
78
17
25
0
56
1.41

Tables:   1

The End!