Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009628.1 Corchorus capsularis cultivar CVL-1 contig09649, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30147

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6802--6843
19
2.3
18
84
8
57
61
0
2
35
1.09
8273--8329
19
3.3
19
67
23
52
24
31
28
15
1.96
8272--8345
33
2.2
33
87
0
112
24
31
27
17
1.97
22264--22511
33
7.4
33
76
5
185
33
25
20
20
1.97
22319--22496
66
2.7
66
84
0
230
32
25
19
22
1.97
22534--22851
33
9.6
33
81
0
321
31
24
20
22
1.98
22322--22721
210
1.9
210
83
1
523
33
25
20
21
1.97
22633--23258
243
2.6
243
84
1
772
32
24
18
24
1.97
22874--23109
33
7.2
33
82
5
262
30
25
18
25
1.98
22888--23011
15
7.6
16
68
16
67
29
24
18
28
1.98
22778--22977
111
1.8
111
88
0
310
31
22
20
26
1.98
23008--23220
111
1.9
111
81
3
259
34
23
17
23
1.96
23118--23259
33
4.3
33
74
8
119
35
24
14
25
1.93
23123--23259
66
2.1
66
81
2
159
35
25
13
25
1.93
22974--23249
144
1.9
144
81
8
339
33
24
17
25
1.96
23185--23319
57
2.4
57
74
10
141
42
24
11
21
1.85

Tables:   1

The End!