genome.fa.s9630.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009630.1 Corchorus capsularis cultivar CVL-1 contig09651, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33111

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--65	2	32.5	2	100	0	130	0	49	0	50	1.00
2111--2259	33	4.4	33	76	6	120	30	28	18	22	1.97
2147--2206	18	3.5	18	75	8	63	35	21	18	25	1.96
2158--2206	15	3.0	16	72	16	55	34	22	18	24	1.96
2111--2272	66	2.4	68	81	3	166	30	27	19	22	1.98
2282--2838	33	17.0	33	81	4	538	30	26	20	23	1.98
2609--2743	51	2.8	49	81	7	143	34	24	18	22	1.96
2657--2760	51	2.0	51	88	0	154	33	25	18	22	1.96
2671--2772	51	2.1	50	83	5	127	31	27	18	22	1.97
2879--2985	33	3.2	34	76	4	85	39	26	10	24	1.87
5702--5817	18	6.6	17	76	11	83	32	25	19	22	1.97
5705--5799	33	2.8	34	77	4	93	33	25	17	23	1.96
5787--5851	33	2.0	33	84	6	87	30	26	18	24	1.98
5876--6333	33	14.0	33	74	8	265	32	26	18	22	1.97
5918--6039	15	7.5	15	70	15	64	30	27	20	22	1.98
5716--6060	18	20.9	17	67	17	140	31	24	20	24	1.98
5914--6111	51	3.9	51	73	10	156	30	27	19	22	1.98
6212--6271	15	3.8	15	77	12	66	33	26	16	23	1.96
5738--6323	261	2.2	261	83	3	741	32	26	18	23	1.97
6014--6531	210	2.5	208	80	6	512	34	26	16	22	1.95
5904--6322	228	1.8	228	81	4	522	32	26	18	22	1.97
5881--6333	99	4.6	99	74	9	379	31	26	18	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6171--6504	177	1.9	177	82	3	422	35	26	16	22	1.95
6348--6540	33	5.8	33	80	2	154	37	25	15	21	1.93
6348--6543	66	3.0	67	79	7	179	37	26	15	21	1.93
6434--6486	18	3.1	18	78	15	76	41	26	7	24	1.81
6425--6549	15	7.7	15	70	15	79	41	28	10	20	1.84
7567--7620	28	2.0	27	85	3	72	44	11	9	35	1.72
10612--10654	15	2.8	16	79	13	54	23	30	25	20	1.99
10863--11090	120	1.9	120	94	0	402	36	17	20	26	1.94
11543--11618	31	2.5	30	76	16	75	31	17	25	26	1.97
13048--13094	24	2.0	24	83	8	60	42	0	2	55	1.12
13053--13110	14	4.2	13	77	14	53	39	0	1	58	1.08
15851--15890	15	2.7	15	84	0	53	27	25	20	27	1.99
15582--16979	213	6.6	211	79	5	1327	35	21	19	23	1.96
16950--17033	33	2.5	33	86	0	105	36	20	20	22	1.95
15582--17032	420	3.4	423	78	7	1381	35	22	19	23	1.96
16983--17084	33	3.1	33	85	0	123	34	17	20	27	1.95
17093--17123	9	3.4	9	95	0	53	25	25	16	32	1.96
17825--18112	128	2.2	129	93	1	499	12	25	29	32	1.92
24874--24927	19	2.8	20	75	16	58	42	12	16	27	1.85
26138--26285	32	4.6	32	98	0	278	15	46	28	9	1.77
26345--26430	33	2.6	32	82	12	111	12	33	41	11	1.80
26500--26632	32	4.1	32	81	3	142	13	40	36	9	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27006--27046	21	2.0	21	85	9	57	24	4	0	70	1.06
30095--30160	9	7.3	9	78	0	69	40	12	40	6	1.67
30068--30160	18	5.0	18	73	7	78	45	12	35	6	1.68
30090--30196	36	3.1	36	80	12	127	45	11	37	5	1.63
30137--30178	21	2.0	21	86	9	59	45	14	35	4	1.66
30128--30190	30	2.1	30	87	0	90	42	12	38	6	1.68
31581--31606	12	2.2	12	100	0	52	0	7	23	69	1.14

Tables:   1

The End!