Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009631.1 Corchorus capsularis cultivar CVL-1 contig09652, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60917

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
514--648
67
2.0
67
94
0
234
52
18
2
26
1.57
1112--1158
16
2.8
16
78
15
51
40
0
2
57
1.11
1504--2641
331
3.4
326
81
6
1168
35
14
12
36
1.85
3026--3050
12
2.1
12
100
0
50
0
8
0
92
0.40
2822--6323
671
5.3
655
76
9
2922
32
13
15
38
1.86
3079--6323
996
3.3
980
79
8
3271
32
13
15
38
1.87
8399--8519
24
4.8
24
68
12
73
20
36
22
20
1.95
8387--8519
51
2.6
51
89
4
223
19
37
22
20
1.94
8383--8523
27
5.4
27
68
13
116
20
37
21
19
1.94
10364--10758
165
2.4
166
84
3
526
39
15
14
30
1.87
12366--12394
7
4.1
7
100
0
58
13
13
13
58
1.63
17594--17674
27
3.0
27
98
0
153
25
1
18
54
1.51
19870--19908
20
2.0
20
85
10
53
48
28
7
15
1.72
36835--36872
19
2.0
20
89
5
60
34
2
26
36
1.71
40921--40962
3
14.0
3
94
0
75
33
0
30
35
1.58
45020--45060
17
2.3
18
87
4
57
7
2
9
80
0.99
45021--45061
18
2.3
18
87
8
57
7
2
7
82
0.91
48667--48821
77
2.0
76
98
1
301
34
14
11
40
1.82
58542--58920
187
2.0
187
97
0
713
36
21
17
24
1.94

Tables:   1

The End!