genome.fa.s9640.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009640.1 Corchorus capsularis cultivar CVL-1 contig09661, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  101270

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
521--795	109	2.5	109	93	4	455	38	11	1	48	1.50
9042--9084	21	2.0	21	95	0	77	32	11	13	41	1.81
14009--14168	31	5.5	31	76	13	140	34	27	21	16	1.95
14054--14097	22	2.2	20	84	12	54	43	22	15	18	1.88
14018--14120	53	1.9	53	88	0	152	36	27	19	16	1.93
20522--20577	22	2.5	22	80	8	60	53	1	1	42	1.21
20990--21057	33	2.1	33	94	0	118	25	19	14	41	1.89
21015--21126	55	2.0	55	96	0	206	25	20	17	36	1.94
22422--22475	20	2.6	21	94	5	101	50	11	3	35	1.56
24039--24107	36	1.9	36	100	0	138	20	24	11	43	1.85
27668--27716	20	2.4	21	89	3	82	69	8	10	12	1.37
29359--29440	31	2.7	31	90	7	125	39	3	14	42	1.63
30359--30384	6	4.3	6	100	0	52	84	0	0	15	0.62
39046--39072	2	13.5	2	100	0	54	48	0	0	51	1.00
40984--41015	2	16.0	2	100	0	64	50	0	0	50	1.00
41162--41400	78	3.2	77	90	7	359	37	12	0	49	1.44
41162--41394	70	3.2	70	84	10	306	37	12	0	49	1.45
55484--55527	22	2.0	22	95	0	79	56	4	9	29	1.50
58521--58560	21	2.0	21	85	9	57	30	12	17	40	1.86
80179--80247	21	3.3	21	88	8	88	27	11	23	37	1.89
80189--80255	21	3.2	20	85	12	82	32	13	19	34	1.91
80196--80262	21	3.2	21	82	4	73	26	16	17	38	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93434--93473	20	2.0	20	95	0	71	35	12	5	47	1.63
94253--94528	109	2.5	110	92	5	450	48	1	10	38	1.47
94808--94835	13	2.2	13	100	0	56	39	14	0	46	1.44

Tables:   1

The End!