genome.fa.s9645.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009645.1 Corchorus capsularis cultivar CVL-1 contig09666, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  174187

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12015--12205	95	2.0	95	88	0	283	38	11	26	23	1.89
23078--23156	31	2.5	31	85	0	113	31	25	29	13	1.94
23088--23174	31	2.8	31	85	3	95	33	25	27	13	1.94
27995--28025	13	2.4	13	94	0	53	6	12	22	58	1.58
40346--40391	24	1.9	24	82	8	58	15	34	30	19	1.93
40845--40898	24	2.2	25	87	6	76	44	14	33	7	1.73
41038--41652	315	2.0	308	93	3	1045	30	17	11	40	1.85
43552--43624	36	2.0	36	91	0	119	27	12	30	30	1.93
52592--52628	14	2.7	14	84	16	51	62	0	0	37	0.96
65873--65923	20	2.5	21	80	6	68	23	0	15	60	1.35
74940--74999	32	1.9	31	93	3	102	33	8	26	31	1.86
87746--87891	79	1.8	79	88	2	222	28	11	19	41	1.86
95907--95941	15	2.3	15	90	0	52	0	20	2	77	0.90
98590--98636	22	2.2	22	85	7	62	42	8	12	36	1.74
111459--111546	33	2.6	35	89	5	128	18	6	28	46	1.74
111861--111939	38	2.1	38	92	0	131	55	15	10	18	1.67
116401--116884	241	2.0	242	99	0	961	33	19	15	31	1.93
122636--122670	14	2.6	13	86	8	52	28	20	14	37	1.91
124927--124951	12	2.1	12	100	0	50	76	0	8	16	1.02
130342--130397	27	2.1	27	96	0	103	55	7	19	17	1.65
140725--140784	30	2.0	31	86	3	86	38	16	26	18	1.92
140770--140799	15	2.0	15	93	0	51	36	20	16	26	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
140738--140828	44	2.0	44	91	6	148	36	15	24	24	1.94
140785--140847	29	2.2	29	80	5	74	39	15	25	19	1.91
142720--142753	17	2.0	17	94	0	59	32	20	11	35	1.89
146146--146172	5	5.4	5	100	0	54	77	0	0	22	0.76
150700--150757	29	2.0	29	100	0	116	34	31	17	17	1.93
165331--165480	30	5.0	30	73	13	110	28	14	15	41	1.86
165308--165425	61	1.9	61	91	0	191	28	14	13	43	1.83
165272--165403	31	4.1	33	73	17	100	29	12	12	45	1.79
166512--166693	95	1.9	95	82	4	224	35	13	8	42	1.76
166770--166929	85	1.9	85	84	7	218	30	16	12	41	1.85
167829--169241	327	4.3	326	78	9	1290	37	16	12	33	1.87
169083--169384	166	1.8	165	80	5	367	35	17	10	37	1.84
169249--174144	333	14.8	332	83	3	5988	36	15	14	33	1.88
169249--174144	663	7.4	664	89	2	7334	36	15	14	33	1.88

Tables:   1

The End!