genome.fa.s9646.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009646.1 Corchorus capsularis cultivar CVL-1 contig09667, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  96389

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
418--1608	27	44.0	27	83	8	1403	32	21	16	28	1.95
1263--1335	39	2.0	38	87	12	109	31	24	15	28	1.95
1304--1608	50	5.8	51	85	7	373	33	21	15	29	1.94
8003--8135	68	1.9	69	90	1	214	27	14	28	29	1.95
14770--14817	22	2.3	21	86	10	64	39	25	14	20	1.91
14737--14840	53	1.9	54	84	1	138	36	25	19	18	1.94
15845--15958	57	2.0	57	96	0	210	32	11	23	32	1.90
16389--16435	18	2.6	18	86	6	69	42	0	6	51	1.27
34239--34310	29	2.4	29	88	4	101	18	27	16	37	1.92
34645--34688	23	1.9	23	95	0	79	59	31	9	0	1.29
36389--36427	2	19.5	2	89	0	60	51	2	0	46	1.14
36847--36914	27	2.5	28	80	7	86	30	13	22	33	1.92
41284--41351	27	2.5	28	80	7	86	29	11	23	35	1.90
41527--41587	2	30.5	2	100	0	122	50	49	0	0	1.00
42620--42668	22	2.2	22	100	0	98	18	10	36	34	1.85
46024--46121	31	3.3	31	72	13	116	65	3	22	9	1.36
46006--46131	57	2.2	57	97	1	234	65	5	21	7	1.38
47163--47657	257	1.9	257	98	0	963	18	22	17	42	1.90
65768--65911	30	4.8	30	81	3	121	29	9	29	31	1.88
73987--74018	15	2.1	16	94	5	57	3	18	0	78	0.89
86312--86477	82	2.0	82	91	0	269	40	19	15	24	1.90
86587--86612	7	3.7	7	100	0	52	42	30	0	26	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91457--91502	24	1.9	24	81	0	56	43	8	43	4	1.55
93457--93758	150	2.0	146	92	3	498	45	19	15	19	1.85

Tables:   1

The End!