Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01009647.1 Corchorus capsularis cultivar CVL-1 contig09668, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 19903
ACGTcount: A:0.35, C:0.18, G:0.17, T:0.30


Found at i:757 original size:11 final size:11

Alignment explanation


    Indices: 741--771  Score: 53
    Period size: 11  Copynumber: 2.8  Consensus size: 11

        731 CATGATGCCA

                       
        741 GAATTCACTTC
          1 GAATTCACTTC

                       
        752 GAATTCACTTC
          1 GAATTCACTTC

            *        
        763 AAATTCACT
          1 GAATTCACT

        772 CTTTGAGCAA


Statistics
Matches: 19,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  11   19  1.00

ACGTcount: A:0.32, C:0.26, G:0.06, T:0.35


Consensus pattern (11 bp):   
GAATTCACTTC
Done.