Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009650.1 Corchorus capsularis cultivar CVL-1 contig09671, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20097

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--3371
331
10.2
332
86
4
4384
35
16
14
33
1.90
1--3370
667
5.1
662
86
5
4318
35
16
14
33
1.90
3351--3398
23
2.1
23
96
0
87
35
25
10
29
1.89
4120--4182
30
2.1
30
100
0
126
39
6
15
38
1.73
5062--5109
21
2.7
16
72
27
51
39
8
33
18
1.81
4968--5336
90
4.1
90
93
2
638
33
20
32
13
1.91
5240--5287
21
2.7
16
72
27
51
39
8
33
18
1.81
4982--5336
178
2.0
176
95
1
638
33
21
32
13
1.92
11799--11826
14
2.0
14
100
0
56
50
14
7
28
1.69
11946--12024
31
2.5
31
85
0
113
36
20
12
30
1.90
17968--18259
145
2.0
145
100
0
584
38
11
12
37
1.80
19926--20090
31
5.5
31
71
16
148
33
18
20
27
1.96
19930--20094
60
2.8
60
91
0
276
33
18
20
27
1.96
19930--20071
29
4.7
30
71
15
105
32
19
20
28
1.97

Tables:   1

The End!