Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009651.1 Corchorus capsularis cultivar CVL-1 contig09672, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91644

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2907--3007
37
2.5
40
82
15
136
23
9
16
49
1.76
2930--3007
37
2.1
38
95
2
140
23
10
16
50
1.76
9481--9505
2
12.5
2
100
0
50
48
0
0
52
1.00
16659--16739
29
2.7
29
88
3
108
25
24
12
37
1.91
17026--17281
127
2.0
127
97
0
485
27
22
14
35
1.93
17685--17713
2
15.0
2
92
7
51
51
0
0
48
1.00
40033--40078
2
23.0
2
95
0
83
47
2
0
50
1.13
47313--47338
2
13.0
2
100
0
52
50
0
0
50
1.00
59124--59156
7
4.7
7
92
7
50
0
9
0
90
0.44
59123--59156
8
4.5
8
89
10
54
0
8
0
91
0.43
59123--59156
15
2.4
14
90
9
59
0
8
0
91
0.43
62249--62305
28
2.0
27
87
12
80
38
12
14
35
1.83
70258--70289
2
16.5
2
93
6
57
53
0
0
46
1.00
72269--72304
2
18.0
2
88
11
56
47
0
2
50
1.15
74870--75126
132
2.0
130
92
3
435
29
12
14
42
1.83
76790--76899
36
3.1
36
91
0
175
40
24
13
21
1.90

Tables:   1

The End!