Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009653.1 Corchorus capsularis cultivar CVL-1 contig09674, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  96978

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--1674
332
5.1
332
84
3
2216
32
15
16
35
1.90
1849--1895
24
2.0
24
100
0
94
14
12
25
46
1.80
9021--9054
16
2.1
16
100
0
68
32
5
14
47
1.69
9669--9695
2
13.5
2
100
0
54
51
48
0
0
1.00
11581--11605
8
3.1
8
100
0
50
48
12
0
40
1.40
17865--17986
61
2.0
61
98
0
235
47
0
4
46
1.29
50358--50388
3
10.3
3
100
0
62
35
0
32
32
1.58
54388--54432
23
2.0
23
82
8
56
57
15
4
22
1.56
61025--61097
31
2.4
30
72
20
71
31
8
4
56
1.48
62605--62769
90
1.8
90
82
7
210
36
17
13
32
1.89
67943--67985
22
2.0
22
95
0
77
9
30
32
27
1.88
83510--83607
31
3.2
32
79
5
112
17
22
25
34
1.95
84360--84387
2
14.0
2
100
0
56
50
0
0
50
1.00
93546--93596
8
5.9
9
76
15
54
23
21
23
31
1.98
94950--94984
2
17.5
2
100
0
70
51
0
0
48
1.00
95711--95769
31
1.9
31
85
0
82
45
6
18
28
1.75
96369--96407
17
2.4
16
80
12
53
48
10
0
41
1.37

Tables:   1

The End!