Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009656.1 Corchorus capsularis cultivar CVL-1 contig09677, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61195

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1361--1399
4
10.0
4
84
15
55
25
51
23
0
1.49
14639--14670
6
5.3
6
100
0
64
0
15
53
31
1.43
22406--22433
2
14.0
2
100
0
56
50
0
0
50
1.00
23423--23453
8
3.9
8
95
0
53
58
25
0
16
1.38
24730--24824
31
2.9
33
84
6
106
14
33
37
13
1.86
24971--25058
29
3.0
29
78
9
97
19
27
17
36
1.94
25000--25078
29
2.7
28
78
7
77
20
30
15
34
1.93
25091--25170
29
2.7
30
82
3
108
33
15
32
18
1.92
26773--26802
2
15.5
2
93
6
53
0
50
0
50
1.00
32854--32924
36
2.0
36
88
0
106
25
25
19
29
1.99
33532--33565
2
17.0
2
93
0
59
0
52
0
47
1.00
34492--34527
18
2.0
18
94
0
63
69
0
19
11
1.18
41411--41441
2
16.0
2
93
6
55
48
0
0
51
1.00
41922--41946
12
2.1
12
100
0
50
60
8
0
32
1.26
49655--49691
1
37.0
1
94
0
65
0
2
0
97
0.18
53850--53948
50
2.0
50
95
0
180
32
8
31
28
1.86
54435--55277
304
2.9
289
78
6
797
37
17
14
30
1.90
55022--57632
330
8.0
331
88
3
3727
35
18
15
30
1.92
55022--57632
972
2.7
969
88
3
3552
35
18
15
30
1.92
57721--59090
330
4.1
331
92
0
2233
35
18
14
31
1.91
58936--59245
153
2.0
152
90
3
480
35
20
17
26
1.95
58612--59575
485
2.0
482
92
1
1590
35
19
15
29
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
59088--61195
659
3.2
659
91
2
3446
34
19
15
30
1.93
59088--61195
331
6.4
331
91
2
3441
34
19
15
30
1.93

Tables:   1

The End!