genome.fa.s9658.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009658.1 Corchorus capsularis cultivar CVL-1 contig09679, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  148694

Tables:   1   

This is table  1  of  1  ( 72 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14--1516	332	4.6	328	87	4	2013	35	18	14	31	1.91
14--1516	660	2.3	652	86	3	2075	35	18	14	31	1.91
4796--4825	7	4.3	7	100	0	60	40	0	30	30	1.57
20538--20577	6	6.7	6	100	0	80	47	0	17	35	1.48
25362--25422	22	2.8	22	85	2	79	39	9	13	37	1.77
25454--25575	44	2.8	44	86	4	178	34	16	13	36	1.87
25475--25619	44	3.4	41	80	10	132	35	15	9	38	1.81
25561--25632	21	3.4	21	77	9	74	34	11	8	45	1.70
25561--25703	22	6.8	21	69	15	89	33	16	9	41	1.79
25707--25749	22	2.0	22	90	0	68	51	20	4	23	1.66
26657--26722	31	2.1	31	94	0	114	53	4	18	24	1.63
26765--26798	15	2.2	16	89	5	52	35	2	2	58	1.28
28234--28316	41	2.0	41	93	4	141	42	3	6	48	1.45
28655--28692	11	3.5	11	89	10	51	39	0	2	57	1.12
29719--29758	2	20.0	2	100	0	80	50	0	0	50	1.00
30761--30808	2	23.5	2	83	12	62	45	4	0	50	1.21
37418--37447	7	4.4	7	95	4	53	26	26	0	46	1.53
38308--38364	5	12.0	5	85	14	61	0	1	14	84	0.71
38308--38364	15	4.0	14	82	17	73	0	1	14	84	0.71
39212--39253	19	2.3	18	84	8	57	61	0	2	35	1.09
40240--40280	20	2.0	20	95	0	73	46	0	21	31	1.52
40246--40291	20	2.3	20	88	3	67	47	2	21	28	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40422--40504	39	2.1	39	86	0	112	30	6	19	44	1.74
41069--41157	41	2.2	41	95	0	160	47	4	7	40	1.53
41110--41238	65	2.0	65	93	0	222	45	5	10	38	1.61
41289--41369	17	4.1	20	72	20	64	60	2	22	14	1.46
41293--41361	22	3.2	22	71	19	72	62	1	20	15	1.40
44531--44607	32	2.4	32	86	2	102	37	35	10	16	1.83
53731--53759	8	3.6	8	100	0	58	89	0	10	0	0.48
55567--55598	17	1.9	16	93	6	55	31	12	21	34	1.91
61478--61522	22	2.0	22	82	0	54	77	0	20	2	0.87
61485--61514	16	1.9	15	93	6	51	73	0	23	3	0.98
63464--63489	2	13.0	2	100	0	52	50	0	50	0	1.00
82780--82827	9	5.3	9	80	9	62	41	0	4	54	1.20
83425--83468	6	7.3	6	97	0	79	18	63	15	2	1.41
88384--88421	2	19.0	2	100	0	76	50	0	0	50	1.00
89743--89768	6	4.3	6	100	0	52	34	50	15	0	1.45
93064--93095	3	10.7	3	100	0	64	65	0	0	34	0.93
98097--98130	6	5.7	6	92	0	59	35	0	20	44	1.52
99426--99453	1	28.0	1	100	0	56	0	0	0	100	0.00
99606--99634	2	14.5	2	100	0	58	48	0	0	51	1.00
101541--101569	3	9.7	3	100	0	58	34	0	0	65	0.93
101567--101595	2	14.5	2	100	0	58	48	0	0	51	1.00
103496--103520	2	12.5	2	100	0	50	48	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107999--108047	21	2.3	21	92	0	80	40	0	12	46	1.41
110834--110871	6	6.3	6	96	0	67	52	0	28	18	1.45
115181--115215	4	8.8	4	100	0	70	74	0	25	0	0.82
122525--122586	31	2.0	31	96	0	115	59	0	20	19	1.38
123665--123697	3	11.0	3	87	12	50	0	30	36	33	1.58
123850--123876	8	3.4	8	100	0	54	0	11	0	88	0.50
124154--124206	23	2.3	23	87	6	72	45	0	5	49	1.26
126778--126863	45	1.9	45	87	0	127	26	18	18	36	1.94
127442--127475	2	17.0	2	100	0	68	50	0	0	50	1.00
129821--129856	2	18.0	2	94	0	63	47	0	2	50	1.15
134146--134191	2	22.5	2	95	4	83	50	2	0	47	1.13
134889--134951	30	2.1	31	88	8	94	30	12	4	52	1.60
134907--134964	30	2.0	29	83	12	75	34	12	3	50	1.57
136505--136600	21	4.5	22	85	6	126	33	12	17	36	1.88
136519--136600	43	1.9	42	90	2	128	32	13	15	37	1.87
136710--137038	22	14.7	22	71	14	165	37	9	17	35	1.82
136849--136975	69	1.9	67	83	9	168	37	11	15	35	1.83
137163--137458	22	13.6	22	70	14	132	39	8	15	36	1.78
137164--137287	44	2.8	44	83	2	151	41	9	12	36	1.75
137158--137302	66	2.2	66	81	8	170	42	8	14	34	1.77
137163--137324	66	2.4	65	79	8	148	41	9	14	34	1.77
137332--137412	23	3.5	23	74	3	74	40	4	14	39	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
137423--137469	22	2.1	22	92	0	76	34	10	14	40	1.81
137423--137478	22	2.5	23	83	13	73	35	12	12	39	1.81
137867--138199	168	2.0	165	91	2	542	36	9	9	44	1.70
138195--138246	26	2.0	26	100	0	104	23	11	7	57	1.59
139018--139121	37	2.8	37	86	1	138	29	22	7	40	1.81
148145--148204	30	2.0	30	100	0	120	40	10	6	43	1.64

Tables:   1

The End!