Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000966.1 Corchorus capsularis cultivar CVL-1 contig00966, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 625

Length: 1042
ACGTcount: A:0.37, C:0.13, G:0.12, T:0.38

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:464 original size:2 final size:2

Alignment explanation


    Indices: 457--509  Score: 97
    Period size: 2  Copynumber: 26.0  Consensus size: 2

        447 TATGAAGTTC

                                                                          
        457 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA

                           
        499 TA CTA TA TA TA
          1 TA -TA TA TA TA

        510 AAAGTACAAA


Statistics
Matches: 50,  Mismatches: 0, Indels: 2
        0.96            0.00        0.04

Matches are distributed among these distances:
   2   48  0.96
   3    2  0.04

ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49


Consensus pattern (2 bp):   
TA

Done.