Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009661.1 Corchorus capsularis cultivar CVL-1 contig09682, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64277

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5018--5055
7
5.4
7
96
0
67
52
0
13
34
1.40
5629--5654
12
2.2
12
100
0
52
50
15
19
15
1.79
11589--11654
31
2.1
31
91
5
107
27
21
4
46
1.70
11455--11694
123
2.0
123
96
0
444
32
16
4
47
1.65
12635--12695
20
2.9
22
82
9
81
32
16
16
34
1.91
12590--12749
22
7.3
22
73
12
89
31
10
18
38
1.85
12785--12843
22
2.7
22
79
10
66
37
10
16
35
1.83
12856--12914
22
2.7
23
76
10
61
33
6
18
40
1.77
12971--13075
22
4.7
22
72
13
72
41
10
14
33
1.80
12968--13075
46
2.4
46
80
6
123
42
10
14
32
1.80
12998--13100
44
2.4
45
79
9
106
41
9
12
35
1.76
13186--13647
222
2.1
222
98
0
897
40
9
14
35
1.79
13524--13688
82
2.0
84
81
2
199
40
8
15
35
1.77
13631--13700
23
3.0
23
87
0
104
37
7
17
38
1.77
13609--13734
45
2.8
45
78
5
121
38
8
14
38
1.77
13253--13866
22
29.1
22
67
17
207
38
9
15
36
1.80
14926--15034
33
3.3
33
77
12
100
13
39
35
11
1.80
18565--18614
9
5.7
9
77
13
50
50
0
2
48
1.12
18590--18646
20
2.8
20
70
5
51
47
0
5
47
1.24
26796--26820
2
12.5
2
100
0
50
48
0
0
52
1.00
26862--26957
33
2.9
33
98
0
183
55
9
25
10
1.63
27970--27994
4
6.2
4
100
0
50
24
0
0
76
0.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32539--32584
23
2.0
23
95
0
83
32
21
32
13
1.92
33937--33993
27
2.1
28
90
3
89
28
24
5
42
1.76
36026--36103
41
1.9
40
94
2
138
28
19
12
39
1.88
38260--38321
26
2.3
28
91
5
101
56
27
1
14
1.48
38598--38643
22
2.0
22
83
8
56
45
15
10
28
1.79
39570--40015
167
2.7
165
85
3
588
40
15
15
29
1.88
41001--41086
45
1.9
45
90
4
138
26
22
18
32
1.97
41277--41317
2
20.5
2
100
0
82
48
0
0
51
1.00
41652--41718
31
2.2
31
86
5
93
49
10
16
23
1.77
42855--42907
3
17.7
3
96
0
88
30
0
3
66
1.10
42948--43055
31
3.5
31
76
12
105
35
12
18
33
1.89
43173--43239
31
2.2
29
92
5
107
20
16
13
49
1.79
43173--43248
29
2.5
31
87
8
95
22
17
13
47
1.81
44602--44660
30
2.0
30
86
0
82
28
10
45
15
1.78
46636--46660
11
2.3
11
100
0
50
68
16
0
16
1.22
47069--47186
54
2.2
54
93
0
200
22
19
46
11
1.82
47157--47441
81
3.5
82
86
7
366
24
14
46
14
1.81
50398--50467
32
2.2
31
87
7
104
31
5
11
51
1.61
51364--51411
1
48.0
1
91
0
78
95
0
2
2
0.29
51364--51411
22
2.2
22
96
0
87
95
0
2
2
0.29
62647--62688
16
2.7
16
81
3
50
35
0
0
64
0.94
62647--62690
15
2.9
15
83
9
54
34
0
0
65
0.93

Tables:   1

The End!