Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009663.1 Corchorus capsularis cultivar CVL-1 contig09684, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76620

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3839--3872
17
2.0
17
100
0
68
47
17
11
23
1.81
9927--9956
6
5.0
6
100
0
60
50
16
0
33
1.46
11202--11244
1
43.0
1
100
0
86
100
0
0
0
0.00
24699--24736
1
38.0
1
100
0
76
0
0
0
100
0.00
24873--24952
30
2.6
30
96
2
142
12
32
15
40
1.84
25179--25231
26
2.0
27
85
3
72
54
20
11
13
1.69
25262--25297
17
2.1
17
100
0
72
44
22
5
27
1.75
25344--25377
14
2.4
14
90
0
59
41
0
58
0
0.98
37508--37595
22
3.9
22
80
5
113
25
36
21
17
1.94
37505--37598
46
2.0
46
95
0
170
25
34
21
19
1.96
37943--38139
94
2.1
94
99
0
387
40
11
20
27
1.87
43878--43949
30
2.4
30
97
0
135
51
15
20
12
1.75
45116--45140
9
2.8
9
100
0
50
16
0
0
84
0.63
45115--45144
10
3.1
10
90
9
53
20
0
0
80
0.72
48531--48560
14
2.1
14
100
0
60
43
20
6
30
1.77
51381--51476
48
2.0
48
100
0
192
16
43
18
20
1.88
60854--61038
95
1.9
94
81
9
223
24
10
23
41
1.86
72394--72491
32
3.1
32
83
0
115
19
10
32
37
1.85
76229--76556
140
2.4
137
88
5
475
37
9
10
42
1.72

Tables:   1

The End!