Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01009670.1 Corchorus capsularis cultivar CVL-1 contig09691, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 14208
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.31


Found at i:4141 original size:13 final size:13

Alignment explanation


    Indices: 4123--4147  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

       4113 AGGGATAAGT

                         
       4123 ATCTCAAATATAC
          1 ATCTCAAATATAC

                        
       4136 ATCTCAAATATA
          1 ATCTCAAATATA

       4148 TATTCCTTTG


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.48, C:0.20, G:0.00, T:0.32


Consensus pattern (13 bp):   
ATCTCAAATATAC
Done.