Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009671.1 Corchorus capsularis cultivar CVL-1 contig09692, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  89407

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7567--7739
88
2.0
88
95
0
310
37
16
16
30
1.90
8962--9027
28
2.3
29
81
5
71
25
4
12
57
1.53
9175--9270
31
3.1
31
85
8
126
39
5
16
38
1.71
9466--9513
13
3.8
12
77
22
53
56
0
6
37
1.25
9325--9660
181
1.9
176
85
5
469
52
2
7
37
1.45
10279--10347
30
2.3
31
82
7
79
49
11
10
28
1.72
16008--16039
16
2.0
16
100
0
64
18
37
18
25
1.94
16884--16961
35
2.3
35
90
2
122
42
17
20
19
1.90
28600--28700
50
2.0
50
88
3
150
48
11
20
18
1.80
32211--32235
6
4.2
6
100
0
50
0
32
0
68
0.90
38270--38343
29
2.5
28
75
16
78
41
27
13
17
1.87
39097--39131
18
1.9
18
88
0
52
37
20
8
34
1.83
40163--40205
12
3.5
12
93
6
77
25
23
16
34
1.95
40739--40783
21
2.1
22
91
4
74
40
15
6
37
1.74
41174--41277
51
2.0
51
90
0
163
39
18
12
29
1.87
49760--49824
33
2.0
32
84
3
85
10
38
36
13
1.80
49760--49836
33
2.4
33
80
2
84
9
37
38
14
1.78
51216--51393
95
1.9
96
96
1
331
17
23
19
39
1.92
52328--52430
35
2.9
35
97
2
190
13
22
8
55
1.65
64625--64662
6
6.3
6
87
0
58
18
65
2
13
1.37
64999--65032
6
5.7
6
96
0
59
17
70
0
11
1.16
65163--65362
99
2.0
99
94
0
346
17
43
16
23
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
65441--65496
18
3.1
18
71
0
58
21
51
10
16
1.74
65449--65506
18
3.2
18
72
0
62
13
56
10
18
1.65
65355--65502
36
4.1
36
84
1
199
16
56
10
16
1.67
69875--69901
11
2.5
11
100
0
54
14
7
0
77
0.97
74560--74600
15
2.7
16
85
7
50
12
7
14
65
1.45
75967--75995
2
14.5
2
100
0
58
51
0
0
48
1.00
83734--83812
29
2.7
27
75
19
79
40
26
12
20
1.88
87401--87470
29
2.3
31
74
13
74
35
14
20
30
1.92
88581--88610
7
4.4
7
95
4
53
26
13
0
60
1.34

Tables:   1

The End!