genome.fa.s9674.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009674.1 Corchorus capsularis cultivar CVL-1 contig09695, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  96797

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3600--3662	30	2.1	30	85	5	83	22	33	14	30	1.93
4048--4121	33	2.2	33	92	0	130	39	17	9	33	1.82
4102--4183	33	2.5	34	86	7	107	42	20	7	29	1.79
4137--4241	33	3.2	32	78	5	102	43	20	10	25	1.83
13848--13872	2	12.5	2	100	0	50	48	0	0	52	1.00
14113--14600	256	1.9	254	79	5	554	34	9	18	37	1.83
28836--28970	67	2.0	67	94	0	234	39	17	22	21	1.92
29029--29089	13	4.3	14	75	20	56	34	8	0	57	1.29
29038--29066	15	1.9	15	100	0	58	37	6	0	55	1.27
29304--29346	22	2.0	22	90	0	68	11	27	16	44	1.82
42791--42953	81	2.0	85	84	4	217	22	10	18	49	1.77
58315--58368	9	6.0	9	77	16	58	40	0	3	55	1.17
59265--60123	22	39.2	22	71	11	140	36	11	20	31	1.88
59258--60127	44	19.9	44	73	4	497	36	11	20	31	1.88
59244--60171	66	14.1	65	72	7	511	36	11	20	31	1.88
59563--60000	197	2.2	197	80	4	472	36	12	21	29	1.91
59651--60088	197	2.2	196	79	6	431	36	11	21	30	1.89
60092--60138	22	2.1	22	84	7	60	40	8	12	38	1.74
73519--73565	23	2.0	23	100	0	94	25	4	0	70	1.05
77540--77832	156	1.9	156	85	4	412	31	15	19	33	1.93
79079--79188	56	1.9	57	87	5	161	56	7	14	21	1.63
79466--79567	28	3.6	28	92	2	159	15	13	29	41	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
80911--80972	31	2.0	31	100	0	124	29	12	19	38	1.89
82804--83144	32	10.7	32	82	8	358	52	4	24	17	1.63
82804--83145	65	5.4	63	79	9	331	52	4	24	17	1.63
83123--83313	40	4.8	40	81	1	222	51	5	20	22	1.67
83295--83353	15	3.8	16	76	8	50	52	6	18	22	1.68
83322--83367	22	2.1	22	91	0	74	56	4	17	21	1.58
83326--83374	22	2.2	22	85	0	62	59	2	18	20	1.48
83326--83396	29	2.4	29	84	9	83	57	2	18	21	1.52
83387--83428	22	1.9	22	85	0	57	50	4	23	21	1.68
84439--84491	17	3.2	16	76	10	54	16	13	5	64	1.47
84515--84605	26	3.3	26	77	14	94	20	24	4	50	1.66
84562--84635	37	2.0	37	85	12	100	20	25	4	50	1.66
84615--84677	27	2.3	27	88	0	90	15	22	4	57	1.57
84669--84791	28	4.5	28	87	5	162	15	19	4	60	1.53
84624--84719	45	2.2	44	80	10	106	15	21	5	57	1.58
84875--84960	7	11.9	7	70	16	59	18	24	2	54	1.55
84854--85067	22	10.1	22	80	10	223	20	20	4	55	1.61
84736--84914	98	1.8	98	79	7	211	18	18	3	58	1.55
84853--85046	58	3.2	58	75	13	201	20	20	4	54	1.62
84874--84966	36	2.6	36	86	5	116	19	23	3	53	1.59
84875--84960	15	5.9	14	73	12	59	18	24	2	54	1.55
85050--85124	27	2.8	27	93	0	123	30	18	4	46	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90064--90097	2	17.0	2	100	0	68	50	0	0	50	1.00
94095--94563	233	2.0	233	97	0	893	28	10	13	47	1.76
94607--95402	400	2.0	401	84	3	1034	30	13	11	44	1.79
96375--96408	16	2.1	16	89	10	52	64	11	8	14	1.49

Tables:   1

The End!