Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009675.1 Corchorus capsularis cultivar CVL-1 contig09696, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94071

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
235--300
28
2.2
31
86
7
93
46
10
18
24
1.80
419--561
31
4.6
31
78
8
130
31
16
11
39
1.85
446--561
60
1.9
61
82
7
146
30
17
12
39
1.87
1228--1261
14
2.5
14
90
4
52
55
5
0
38
1.24
1481--1515
3
11.7
3
100
0
70
34
0
0
65
0.93
2413--2522
31
3.6
31
85
2
143
42
11
15
30
1.83
2652--2718
31
2.2
31
92
5
111
20
17
11
49
1.79
3673--3755
31
2.7
30
83
5
94
37
14
22
25
1.92
6003--6046
21
2.1
21
83
8
54
18
31
9
40
1.81
6246--6328
32
2.5
32
83
11
114
15
36
31
16
1.91
6385--6472
33
2.7
33
84
10
117
11
29
38
20
1.87
6395--6447
16
3.2
16
70
15
54
7
28
45
18
1.77
7836--7886
26
2.0
26
92
0
84
31
13
13
41
1.84
9935--10027
48
1.9
48
97
0
177
31
24
7
36
1.83
21794--21878
41
2.1
41
86
0
116
25
20
7
47
1.75
22489--22531
18
2.2
20
88
8
63
48
13
6
30
1.69
54285--54322
19
2.0
19
94
0
67
21
18
15
44
1.86
54631--54691
19
3.3
19
70
25
67
34
24
6
34
1.81
54615--54692
36
2.2
36
95
2
140
35
21
7
34
1.82
55539--55580
23
2.0
22
86
13
61
19
16
7
57
1.62
61467--61883
207
2.0
207
99
0
825
28
12
19
40
1.87
64405--64471
33
2.0
33
97
0
125
25
40
25
8
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
67833--67935
53
1.9
53
88
0
152
17
20
26
35
1.94
82907--82932
10
2.6
10
100
0
52
30
23
19
26
1.98

Tables:   1

The End!