Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009679.1 Corchorus capsularis cultivar CVL-1 contig09700, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56276

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5768--5796
2
14.5
2
100
0
58
48
0
0
51
1.00
5924--5949
6
4.3
6
100
0
52
61
19
0
19
1.35
11824--11863
12
3.2
12
89
3
53
40
0
50
10
1.36
12854--13293
167
2.6
165
87
4
618
39
16
15
29
1.88
13767--14803
427
2.4
430
83
4
1220
30
12
12
43
1.81
23302--23338
19
2.0
18
89
5
56
29
21
8
40
1.82
25655--25687
6
5.7
6
96
3
59
54
12
0
33
1.37
29641--29670
15
1.9
16
93
6
53
10
13
26
50
1.73
32474--32525
15
3.4
15
81
5
68
3
13
40
42
1.62
32519--32563
17
2.6
17
89
0
63
2
22
51
24
1.60
33397--33434
6
6.5
6
82
17
53
0
18
47
34
1.49
41468--41504
19
2.0
18
89
5
56
29
21
8
40
1.82
54019--54071
23
2.4
21
73
11
52
11
41
35
11
1.77
54294--54354
30
2.0
30
90
0
95
14
21
19
44
1.86

Tables:   1

The End!