Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009682.1 Corchorus capsularis cultivar CVL-1 contig09703, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52885

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7531--7559
13
2.1
14
93
6
51
48
10
20
20
1.79
14750--14811
31
2.0
31
93
0
106
25
19
19
35
1.95
18669--18701
7
4.7
7
96
0
57
18
30
12
39
1.87
18932--18983
26
2.0
26
100
0
104
42
23
15
19
1.89
19688--19728
10
4.2
10
90
6
66
12
7
31
48
1.68
26822--26928
31
3.6
29
80
10
117
31
14
23
29
1.95
37241--37291
24
2.1
25
85
3
68
17
7
5
68
1.34
38638--38709
33
2.2
33
82
0
81
26
5
20
47
1.72
38706--38761
27
2.0
28
89
3
87
35
8
14
41
1.77
38711--38767
27
2.1
27
86
0
78
35
12
14
38
1.83
40591--40632
21
2.0
21
95
0
75
19
30
33
16
1.94
40599--40640
21
2.1
20
86
8
59
19
33
33
14
1.91
44908--45596
50
14.0
50
82
5
744
37
17
28
16
1.92
45456--45589
48
2.9
45
88
4
198
32
16
27
23
1.96
45408--45589
92
2.0
94
87
2
269
35
16
26
21
1.94
45617--45648
13
2.5
13
100
0
64
46
18
28
6
1.73
45630--45977
40
8.6
41
88
4
451
37
20
27
14
1.92
45630--45977
81
4.3
81
85
6
456
37
20
27
14
1.92
46489--46872
102
3.8
98
78
10
348
36
16
6
40
1.74
46478--46843
201
1.8
199
81
6
463
36
16
6
40
1.74
46488--46872
51
7.7
49
77
8
260
36
16
6
40
1.74
50601--50657
24
2.4
24
90
0
87
36
29
10
22
1.88

Tables:   1

The End!