Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009687.1 Corchorus capsularis cultivar CVL-1 contig09708, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20675

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4556--5035
49
9.9
48
81
6
479
22
27
17
32
1.96
4549--4981
146
3.0
146
83
3
489
21
27
17
32
1.96
4556--5067
146
3.5
142
76
14
445
21
27
17
33
1.96
4561--5074
97
5.3
95
80
8
337
22
27
17
32
1.97
8376--8422
16
2.8
17
83
6
60
29
14
34
21
1.93
10861--10932
36
2.0
36
100
0
144
44
16
11
27
1.82
12020--12095
29
2.6
29
93
0
125
28
7
31
31
1.86
13466--13509
18
2.4
18
88
7
63
50
2
2
45
1.27
15483--16119
22
29.6
22
68
13
201
35
15
9
39
1.80
15620--15694
21
3.6
21
96
0
132
34
16
8
41
1.77
15815--15890
19
3.5
22
74
15
70
35
15
9
39
1.80
16069--16119
19
2.6
20
90
6
86
25
17
11
45
1.83
16231--16476
22
11.2
22
74
6
176
32
15
9
41
1.80
16201--16391
44
4.4
45
74
8
153
35
13
8
43
1.74
16286--16460
68
2.6
66
76
11
171
34
15
10
39
1.81
16514--16564
22
2.3
22
82
0
66
43
17
7
31
1.78
16664--16803
22
6.3
22
71
12
79
40
20
7
31
1.81
16975--17012
19
2.0
20
85
15
53
63
2
5
28
1.30

Tables:   1

The End!