Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009688.1 Corchorus capsularis cultivar CVL-1 contig09709, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47785

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1747--1909
27
6.0
27
81
2
175
28
36
15
18
1.92
1735--1902
54
3.1
54
81
3
212
27
36
17
18
1.93
2439--2508
32
2.2
32
94
0
122
10
30
47
12
1.75
3793--4041
78
3.2
77
87
5
356
50
1
12
34
1.50
4524--4553
5
6.0
5
100
0
60
80
0
0
20
0.72
22156--22205
2
26.0
2
84
15
70
52
2
0
46
1.12
28448--28541
46
2.0
46
100
0
188
38
14
14
31
1.87
32670--32796
61
2.1
60
97
2
245
24
26
17
31
1.97
34480--34580
31
3.3
31
81
0
112
18
19
26
34
1.95
38606--38632
1
27.0
1
100
0
54
0
0
0
100
0.00
41264--41303
19
2.1
19
100
0
80
35
35
25
5
1.78
42861--42893
16
2.1
16
94
0
57
48
18
18
15
1.81
43041--43098
29
2.0
29
100
0
116
31
13
27
27
1.94
46878--47282
201
2.0
201
99
0
801
29
17
13
38
1.88

Tables:   1

The End!