Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000969.1 Corchorus capsularis cultivar CVL-1 contig00969, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 17167
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.34


Found at i:11588 original size:89 final size:91

Alignment explanation


    Indices: 11431--11607  Score: 286
    Period size: 89  Copynumber: 2.0  Consensus size: 91

      11421 CCATTCTAGC

                *                                             *              
      11431 AAATGCACGTGTGCTAATGATTTATCAATTGGGACAATTAAGCCATCTGATTCTCAATTTGGGAC
          1 AAATACACGTGTGCTAATGATTTATCAATTGGGACAATTAAGCCATCTGACTCTCAATTTGGGAC

                                      
      11496 AA-TTACCCCTACAACTAATTGTCAA
         66 AATTTACCCCTACAACTAATTGTCAA

                         *                                                   
      11521 AAATACACGTGTGTTAATGA-TTATCAATTGGGACAATTAAGCCATCTGACTCTCAATTTGGGAC
          1 AAATACACGTGTGCTAATGATTTATCAATTGGGACAATTAAGCCATCTGACTCTCAATTTGGGAC

                  * **             
      11585 AATTTAGCTTTACAACTAATTGT
         66 AATTTACCCCTACAACTAATTGT

      11608 ATATAAGTAA


Statistics
Matches: 80,  Mismatches: 6, Indels: 2
        0.91            0.07        0.02

Matches are distributed among these distances:
  89   45  0.56
  90   35  0.44

ACGTcount: A:0.33, C:0.18, G:0.16, T:0.33


Consensus pattern (91 bp):   
AAATACACGTGTGCTAATGATTTATCAATTGGGACAATTAAGCCATCTGACTCTCAATTTGGGAC
AATTTACCCCTACAACTAATTGTCAA
Done.