Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009691.1 Corchorus capsularis cultivar CVL-1 contig09712, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44051

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
23--60
19
2.0
20
94
5
69
50
7
10
31
1.66
2957--3012
21
2.8
19
86
5
76
30
23
10
35
1.89
11811--12042
88
2.6
87
87
4
333
24
25
18
31
1.97
12454--12491
17
2.2
17
86
9
51
44
2
21
31
1.66
17262--17287
2
13.0
2
100
0
52
50
0
0
50
1.00
20289--21338
488
2.2
489
84
3
1337
35
14
17
33
1.90
26307--26348
20
2.1
20
100
0
84
9
14
9
66
1.44
29091--29340
48
5.2
48
80
9
235
25
27
11
35
1.90
29091--29340
96
2.6
96
82
3
290
25
27
11
35
1.90
31546--32586
520
2.0
520
96
0
1933
38
18
16
26
1.92
33231--33282
27
1.9
27
92
0
86
26
17
19
36
1.94
33729--33780
27
1.9
27
88
0
77
30
15
15
38
1.88
33117--34320
494
2.4
493
84
4
1534
34
14
17
33
1.90
44025--44051
2
13.5
2
100
0
54
51
0
0
48
1.00

Tables:   1

The End!