Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009692.1 Corchorus capsularis cultivar CVL-1 contig09713, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50793

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2973--3239
135
2.0
135
100
0
534
28
7
22
41
1.81
4613--4637
13
1.9
13
100
0
50
32
8
28
32
1.86
9609--9653
22
2.0
22
100
0
90
8
17
26
46
1.78
9851--9911
25
2.4
25
88
0
95
34
19
9
36
1.85
19654--19688
18
1.9
18
88
0
52
37
5
31
25
1.80
19663--19721
27
2.2
27
93
0
100
37
6
25
30
1.82
24966--25122
20
8.4
20
66
22
76
19
21
6
52
1.68
24980--25018
17
2.5
16
88
12
55
17
23
7
51
1.71
24966--25101
34
3.9
34
74
15
98
19
21
6
52
1.68
24997--25127
56
2.4
55
82
8
151
19
22
5
52
1.66
25063--25122
21
2.9
21
80
14
70
21
20
5
53
1.64
25535--25600
30
2.2
30
83
5
80
25
19
10
43
1.83
26487--26605
51
2.4
51
92
1
195
42
15
6
35
1.73
30960--31005
24
1.9
24
82
8
58
69
21
0
8
1.15
30960--30998
20
2.0
20
85
10
53
69
23
0
7
1.14
29519--31429
612
3.1
609
90
1
2950
39
12
12
35
1.81
38022--38055
18
1.9
18
88
5
52
55
8
2
32
1.45
40408--40439
16
2.0
16
93
0
55
21
6
18
53
1.67
48086--48124
5
7.8
5
94
0
60
0
33
5
61
1.18
48086--48124
15
2.6
15
91
0
69
0
33
5
61
1.18

Tables:   1

The End!