Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009701.1 Corchorus capsularis cultivar CVL-1 contig09722, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41633

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
494--633
75
1.9
74
94
2
228
33
17
6
42
1.74
3472--3604
45
3.0
44
92
4
212
35
18
21
24
1.96
9520--9564
18
2.4
18
81
7
54
55
8
0
35
1.31
9865--9959
31
3.0
31
85
1
109
33
23
21
22
1.97
14520--14565
16
2.9
16
93
6
76
0
6
17
76
1.00
14519--14570
22
2.3
23
87
9
81
0
5
17
76
0.97
14584--14614
15
2.1
15
93
0
53
54
6
9
29
1.57
14566--14788
111
2.0
111
97
0
419
48
15
11
24
1.78
15755--15783
1
29.0
1
100
0
58
100
0
0
0
0.00
19224--19257
17
1.9
18
88
5
52
8
2
58
29
1.43
19272--19337
30
2.2
30
94
0
114
3
4
62
30
1.30
19288--19353
11
6.1
11
70
22
50
1
9
62
27
1.34
19272--19340
3
23.0
3
71
11
52
2
4
62
30
1.29
22797--22839
12
3.6
12
90
0
68
11
2
13
72
1.22
22798--22832
16
2.2
16
94
0
61
8
0
14
77
0.99
26534--26559
11
2.4
11
100
0
52
84
0
0
15
0.62
40448--40487
20
2.0
20
85
5
53
40
17
5
37
1.72

Tables:   1

The End!