Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009706.1 Corchorus capsularis cultivar CVL-1 contig09727, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  100089

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
14809--14852
21
2.0
21
91
8
70
81
0
13
4
0.83
15746--16648
463
2.0
458
84
3
1188
36
13
18
32
1.89
16926--16963
20
1.9
20
94
0
67
47
5
7
39
1.55
17762--17814
26
2.0
26
85
0
70
45
7
13
33
1.71
18857--18887
15
2.1
15
100
0
62
32
6
12
48
1.67
19650--19684
16
2.2
16
94
0
61
37
5
14
42
1.69
21039--21074
14
2.6
14
95
0
63
38
19
19
22
1.93
22110--22135
13
2.0
13
100
0
52
92
7
0
0
0.39
24092--24156
31
2.1
31
91
0
103
20
16
23
40
1.92
30143--30191
21
2.3
21
78
0
53
18
6
8
67
1.37
32437--32536
51
2.0
50
90
2
155
31
20
11
38
1.87
35698--35785
45
2.0
45
93
0
149
42
11
14
31
1.82
36405--36494
43
2.1
43
100
0
180
28
6
32
32
1.83
37431--37572
21
6.5
23
78
13
115
41
10
14
33
1.80
37421--37613
22
8.9
22
77
8
155
41
9
13
34
1.78
37421--37594
65
2.7
65
79
7
185
41
10
14
33
1.79
41055--41106
3
16.3
3
88
7
68
36
1
0
61
1.07
46802--46872
34
2.1
34
100
0
142
15
16
19
47
1.82
47147--47191
21
2.1
22
91
4
74
17
44
8
28
1.79
47285--47310
10
2.6
10
100
0
52
30
30
0
38
1.58
47347--47418
26
2.8
26
89
2
110
55
9
1
33
1.41
47347--47390
15
3.2
15
75
24
60
52
11
0
36
1.38
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47468--47510
22
2.0
22
95
0
77
58
0
2
39
1.11
56708--56734
14
1.9
14
100
0
54
18
7
7
66
1.40
63557--63591
18
2.1
18
89
10
56
22
34
25
17
1.96
66006--66045
21
2.0
20
85
5
53
55
2
0
42
1.13
66023--66076
27
2.0
28
85
10
76
42
3
5
48
1.44
69405--69435
3
10.0
3
93
6
53
3
32
0
64
1.09
72097--72166
31
2.2
33
84
7
90
35
7
7
50
1.57
76768--76822
26
2.1
26
93
0
92
10
14
38
36
1.81
77834--77900
13
5.2
13
70
20
50
43
10
8
37
1.71
86672--86772
50
2.0
50
100
0
202
45
15
20
17
1.85
89906--90124
111
2.0
111
93
1
377
23
21
14
40
1.90
91494--91547
27
2.0
27
85
7
74
37
18
7
37
1.79
97089--97129
1
41.0
1
95
0
73
0
2
0
97
0.17

Tables:   1

The End!